Poster Hall Proteomics

Poster 2024: Deep proteome coverage at scale combined with reproducible quantitation on the timsTOF HT

Poster 2024: Ultra-high sensitive Single Cell Proteomics on the timsTOF Ultra

Poster 2024: Improved dia-PASEF® isolation window schemes for low input proteomics measurements

Poster 2024: Investigating Key Host, Variant and Microbial Peptides for Detection of Oral Cancer using Advanced Multi-omics Methods

Poster 2024: dia-PASEF® Visualization Tool: a shiny App for data visualization and exploration of dia-PASEF® data

Poster 2024: Exploring the power of the timsTOF Ultra to investigate the HLA immunopeptidome with high sensitivity and accuracy, allowing for smaller sample sizes while maintaining a robust immunopeptidome

Poster 2024: TwinScape: a digital twin-driven concept for improved timsTOF platform monitoring and data quality assurance

Poster 2024: Hyperoxia induced loss of Electron Transfer Chain annotated proteins in a lung model of neonatal dysplasia revealed via global proteomic analysis using Bruker timsTOF Ultra MS system

Poster 2024: TIMS DIA-NN 3.0: Improved Algorithms to enhance peptide detection with confidence and accuracy

Poster 2024: TIMSrescore: timsTOF optimized PSM rescoring boosts identification rates for immunopeptidomics

Poster 2024: A CCS-centric HLA-specific trained de novo module for precise and accurate real-time immunopeptide identification on the Bruker ProteoScape™ platform

Poster 2024: Automated and faster library-free dia-PASEF® analysis with a Spectronaut integrated workflow in Bruker ProteoScape™

Poster 2024: Elevating Precision in Omics Applications: A Breakthrough with Monolithic Silica Columns

Poster 2023: Bruker ProteoScape™ 2024: a future-proofed renovation for better robustness, ease of use, flexibility, and scalability

Poster 2023: Multiomic analysis of hepatocellular carcinoma using MALDI Imaging Mass Spectrometry

Poster 2023: Ion-mobility-based gas-phase fractionation dramatically improves ubiquitylated and acetylated peptide identifications and chimeric resolution

Poster 2023: Data to Information to Knowledge effortlessly: Combining timsTOF data with Bruker ProteoScape™ information and Mass Dynamics knowledge to accelerate proteomic discoveries

Poster 2023: dia-PASEF^® for targeted proteomics: development of large-scale assay for quantitation of more than 500 proteins in human plasma sample

Poster 2023: Phosphoproteomics Studies using dia-PASEF^® and short gradients

Poster 2023: Moving proteomics towards the clinic: Real-time dda-PASEF and dia-PASEF^® plasma proteomics analysis with the timsTOF platform and Bruker ProteoScape™

Poster 2023: Imaging Beyond the Slide: Novel Whole-Brain Serial Two-Photon Imaging and Spatial Proteomics in Pre-Clinical Alzheimer’s Disease Animal Models

Poster 2022: Application of a library-free dia-PASEF^® approach for high throughput and high sensitivity

Poster 2022: Ultra-Sensitive Proteome Quantification on the timsTOF SCP Mass Spectrometer

Poster 2022: Comparing dia-PASEF^® and prm-PASEF^® approaches for the absolute quantification of 500 human plasma proteins in colon cancer plasma samples

Poster 2022: Automated workflows for DIA data using DIA-NN on the Bruker ProteoScape™ platform

Poster 2022: Comparing dda-PASEF and prm-PASEF^® approaches for the quantification of 2000 RAS induced Phosphopeptides

Poster 2022: Deep and quantitative succinylation profiling from dietary treatment in liver

Poster 2022: TIMS Viz for Mobility Offset Mass Aligned interrogation of complex samples

Poster 2021: Combining the accurate mass and time tag and ion mobility for label-free and missing peptide and analysis

Poster 2021: CCS-centric protein identification Using IMS score

Poster 2021: Proteomic Profiling of IDH-mutant gliomas enables prediction of chromosomal copy numbers variations

Poster 2021: Open TIMS TimsPy TimsR: open access to timsTOF Pro raw data

Poster 2021: Implementation Of Holistic Glycopeptide PASEF-DDA Data in Diagnostics

Poster 2021: Evaluation of prm-PASEF^® for multiplexed targeted proteomics

Poster 2021: Immune Suppression in the early state of COVID disease

Poster 2021: Novel biofunctional material coupled to PASEF^® enables sensitive extracellular vesicles phosphoproteomic analysis of urine samples

Poster 2021: A streamlined workflow for the quality control, interpretation and analysis of timsTOF Pro data - towards large-scale proteomics

Poster 2021: Draft quantitative proteomic atlas of the human body carcinoma

Poster 2021: Real-time search of ubiquitin diGLY modified peptides and Bruker ProteoScape™ acquisition control on the timsTOF Pro

Poster 2021: PimMDN: Peptide Ion mobility mixture density network

Poster 2024: ENRICH-iST provides enables high coverage of the plasma proteome

Poster 2024: Deep proteome coverage at scale combined with reproducible quantitation on the timsTOF HT

Poster 2024: Ultra-high sensitive Single Cell Proteomics on the timsTOF Ultra

Poster 2023: Mouse fatty liver proteomes in dda-PASEF and dia-PASEF^® from low input using the timsTOF SCP

Poster 2023: The GlycoPaSER prototype as a real-time N-glycopeptide identification tool based on the PaSER™ parallel computing platform

Poster 2023: Data - Information - Knowledge effortlessly: Combining timsTOF data with Bruker ProteoScape™ information and Mass Dynamics knowledge to accelerate proteomic discoveries

Poster 2023: Deeper plasma proteome coverage enables identification of novel biomarkers and classification of diseases

Poster 2023: BiblioPlasma: A gateway for dia-PASEF^® analysis with a library assembled from almost 4500 depleted plasma runs

Poster 2023: Optimizing dia-PASEF^® isolation window schemes for proteomics measurements on a timsTOF Ultra instrument

Poster 2023: Operating, maintaining, and troubleshooting the sensitivity and robustness of timsTOF platforms for proteomics studies

Poster 2023: dia-PASEF^® Visualization Tool: a shiny App for data visualization and exploration of dia-PASEF^® data

Poster 2023: Microflow 4D-Proteomics™ for robust, high-throughput sample analysis

Poster 2023: Pipetting-free single cell analysis with the label-free proteoCHIP and the proteoCHIP Evo96 for high sensitivity proteomics on the timsTOF SCP and the timsTOF Ultra

Poster 2023: Precise and accurate real-time de novo sequencing of timsTOF data with the Novor algorithm on the Bruker ProteoScape™ platform

Poster 2023: Real-Time de novo sequencing of peptide antigens using Bruker ProteoScape™ for ‚Run and Done‘ 4D-immunopeptidomics

Poster 2023: Standardized, high-throughput platform for automated, rapid, and extensive plasma proteome characterization

Poster 2022: dia-PASEF^® for targeted proteomics: development of large-scale assay for quantitation of more than 500 proteins in human plasma sample

Poster 2022: Maximizing information content in ion mobility-enhanced DIA using overlapping, ion mobility-encoded quadrupole windows

Poster 2022: Diving into the complexity of human haptoglobin-hemoglobin interactions

Poster 2022: X!TandemPipeline++: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format

Poster 2022: 4D proteomic profiling of 200 individuals: a high throughput workflow from sample preparation, dia-PASEF^®-MS to 4D data processing to profiling

Poster 2022: Monitoring 1432 Unique Ras Induced phosphopeptides in dda-PASEF and PRM PASEF^®

Poster 2022: TIMS DIA-NN: CCS-Aware DIA Data Analysis

Poster 2022: Realtime TMT Quantification on the timsTOF series with Bruker ProteoScape™

Poster 2022: A novel supervised learning algorithm for real-time collision energy selection to optimize peptide fragmentation in ion mobility-mass spectrometry

Poster 2022: Rapid and Sensitive Phosphotyrosine Detection from Limited Sample Amounts

Poster 2022: PepMPNN: Ion Mobility prediction for any Post Translational Modification

Poster 2022: Optimizing a dia-PASEF^® acquisition and data analysis for non-depleted plasma for rare disease research

Poster 2022: Combining μSPE Chip-based CE with PRM-LIVE and Dynamic Targeting Scheduling for Warp-speed Selectivity Profiling of Deubiquitinase Small Molecule Inhibitors

Poster 2022: Functional diagnostics for congenital disorders of glycosylation from plasma glycopeptide PASEF-DDA data

Poster 2022: Development of proteomic-biomarker landscape of AY9944-treated mouse brain tissues mimic¬king Smith-Lemli-Opitz syndrome (SLOS) by using DIA-PASEF^® and DIA-FAIMS mass spectrometry

Poster 2022: Towards real-time glycopeptide identification on the timsTOF Pro - Bruker ProteoScape™ platform: virtual precursor enabled peptide-moiety identification

Poster 2022: High sensitivity immunopeptidomics on the timsTOF SCP mass spectrometer

Poster 2022: DDA-PASEF Phosphoproteomics reveals TTBK2 function during ciliogenesis

Poster 2022: Utilization of Fast Photo-Oxidation of Proteins and Top Down Mass Spectrometry for Structural Characterization of Protein Complexes

Poster 2022: Blood Proteomic Profiling of Patients with Yellow Fever by Trapped Ion Mobility Mass Spectrometry

Poster 2022: Proteome characterization of tunneling nanotubes with DDA-PASEF acquisition mode

Poster 2022: Maximizing sensitivity and number of targets: evaluation of prm-PASEF^® with live retention time correction on a single cell-capable ESI-TIMS-Q-TOF platform

Poster 2021: Evaluation of dia-PASEF^® for short gradient using library and library free approaches

Poster 2021: CCS-Aware DIA Data Analysis in Bruker ProteoScape™

Poster 2021: N-glycoproteome from a cancer cell line and its non-tumorigenic cell line combining Fbs1-GYR N-glycopeptide enrichment and trapped-ion-mobility-quadrupole-time-of-flight

Poster 2021: Application of TIMScore to De Novo Search Engine, DeepNovo in Bruker ProteoScape™

Poster 2021: Improved Immuno-affinity Enrichment Combined with Trapped Ion Mobility Mass Spectrometry for Significantly Enhanced PTM Sensitivity 

Poster 2021: Bruker ProteoScape™ powered data streams for real-time processing and feedback

Poster 2021: TIMS Viz for Mobility Offset Mass Aligned interrogation of complex samples

Poster 2021: Comparative evaluation of a new processing pipeline for PASEF^® Label-Free Quantification analysis

Poster 2021: Ultra-sensitive proteome quantification on the timsTOF SCP mass spectrometer

Poster 2021: Advantages of a dynamic polygon for MHC class I and II immunopeptides

Poster 2021: High throughput single-shot proteomics on the timsTOF Pro 2

Poster 2021: Label-free quantification of oxidized peptides in eHAP cell lines via a high-throughput dia-PASEF^® workflow

Poster 2021: Studying human haptoglobin hemoglobin structure and interactions using H/D exchange and timsTOF Pro

Poster 2021: Characterization of the salivary protein repertoire of Covid-19 patients during and after disease - a pilot study

Poster 2020: Deeper proteome coverage of musculoskeletal samples 

Poster 2020: High-precision ion mobility calibration greatly improves diaPASEF^® analysis 

Poster 2020: PASEF-DDA enables deep coverage single-shot phosphoproteomics and ion mobility-based elucidation of phosphosite isomers 

Poster 2020: Streamlined sample processing coupled to PASEF^® strategy for in-depth proteome quantification 

Poster 2020: "TimsPy": access timsTOF Pro data easily from Python 

Poster 2020: New PRM-PASEF^® for highly multiplexed targeted acquisition in clinical samples 

Poster 2020: Comparison of different processing pipelines for diaPASEF^® data 

Poster 2020: Characterization of single-shot plasma proteomics performance using the PASEF^® method and systematic investigation into the quantitative proteome depth 

Poster 2020: PASEF^® for sensitive shotgun proteomics: toward single cell analysis 

Poster 2020: Deep Profiling of Tyrosine Phosphorylation in Gastric Cancer Cells 

Poster 2020: PASEF^® and Bolt: enabling comprehensive analysis via high MS/MS acquisition speed and MS/MS sequencing through vast protein databases in minutes 

Poster 2020: Deep, reproducible and high-throughput FFPE analyses: moving toward large-scale clinical omics applications 

Poster 2020: Bruker ProteoScape™: Parallel Database Search Engine in Real-Time 

Poster 2020: Ion Mobility Mass Spectrometry of Glyco- and Phospho-Peptides 

Poster 2020: Reducing compression effects and expanding the multiplex capabilities on a trapped ion mobility Q-TOF 

Poster 2020: Proteomic Analysis of BALF using the PASEF^® method: toward Lung Cancer Biomarker Discovery with 1D LC separation 

Poster 2020: Trapped Ion Mobility Spectrometry and PASEF^® Enables In-depth Characterization of Protein Ubiquitination from Human Cells 

Poster 2020: Highly Sensitivity Lysine Acetylation Profiling with Trapped Ion Mobility Spectrometry and PASEF ^®

Poster 2020: Enhanced identification of bioactive peptides in meat hydrolysates by 4D peptidomics 

Poster 2020: Simplified high-throughput methods for deep and targeted proteome analysis on the timsTOF Pro 

Poster 2020: High throughput proteomics -  Application of diaPASEF^® for short gradients 

Poster 2020: Parallel accumulation – serial fragmentation combined with data-independent acquisition (diaPASEF^®): Bottom-up proteomics with near optimal ion usage 

Poster 2020: Skyline Support for Proteome-wide Data Analysis of Bruker timsTOF diaPASEF^® Acquisition

Poster 2019: Effects of in-source supercharging and subcharging for glycopeptide analysis in a trapped ion mobility quadrupole time-of-flight mass spectrometer 

Poster 2019: Fast nanoLC separations for high throughput body fluid analysis with a TIMS equipped QTOF and 4D feature alignment 

Poster 2019: Short nanoLC gradients optimize throughput on a tims equipped QTOF for deep proteome measurements 

Poster 2019: High Sensitivity PTM Characterization in Cell Lysates Using Trapped Ion Mobility 

Poster 2019: Analysis of Histones from HEK293 Cells using a QTOF with Trapped Ion Mobility and PASEF^® Workflows

Poster 2019: Proteome quality control addressing qualitative and quantitative needs for trapped ion mobility spectrometry and parallel accumulation serial fragmentation 

Poster 2019: Investigating Phytophthora methylation using Trapped Ion Mobility Spectrometry Mass Spectrometry 

Poster 2019: Identification and Quantitation of Phosphopeptide Positional Isomers using Trapped Ion Mobility Spectrometry and PASEF^®

Poster 2019: Comparison of targeted proteomics approaches on a TIMS-Q-TOF 

Poster 2019: Ion mobility enhanced matching between LC-MS runs improves identification and quantification in MaxQuant 

Poster 2019: Analyzing the neuronal phosphoproteome A systematic comparison of Fusion Lumos and timsTOF Pro data

Poster 2018: Generation of a Collisional Cross Section Library for Plant Metabolomics using Trapped Ion Mobility Spectrometry (TIMS) 

Poster 2018: Routine Analysis of Host Cell Proteins in Antibody Preparations using PASEF^®

Poster 2018: TMT Quantification for Shotgun Proteomics on a Trapped-Ion-Mobility quadrupole-Time-Of-Flight mass spectrometer (TIMS-QTOF) powered by Parallel-Accumulation and Serial-Fragmentation (PASEF^®) 

Poster 2018: Applying Trapped Ion Mobility Separation (TIMS) in combination with Parallel Accumulation Serial Fragmentation (PASEF^®) for analysis of lipidomics samples 

Poster 2018: The PASEF^® method on a TIMS-QTOF mass spectrometer for High Sensitivity Phosphoproteomics 

Poster 2018: Evaluation of TIMS MS and MS/MS data for targeted proteomics 

Poster 2018: Maximized throughput and analytical depth for shotgun proteomics using PASEF^® on a TIMS equipped QTOF

Poster 2018: Evaluation of a timsTOF PRO UHR-Q-TOF bottom-up proteomics platform for Proteoform Profiling and Top-Down approaches 

Poster 2018: PASEF^® on a TIMS-QTOF for reproducible, sensitive and highthroughput shotgun proteomics 

Poster 2018: High speed, high sensitivity and high reproducible and accurate label-free quantification using the PASEF^® method on a TIMS-QTOF

Poster 2018: timsTOF Pro and PASEF^® Multiplying Sequencing Speed and Sensitivity in Mass Spectrometry-based Proteomics

Poster 2018: Trapped Ion Mobility Spectrometry and PASEF^® for Enhanced Observation of Chemically Crosslinked Peptides 

Poster 2018: Rapid Isobaric Peptide Classification by Trapped Ion Mobility Spectrometry 

Poster 2018: Deep proteome mining of FFPE tissue with PASEF^® Technology 

Poster 2018: PEAKS™ Software for the processing of timsTOF Pro PASEF^® data: identification and label-free quantitation 

Poster 2018: Data-dependent auto-MSMS 3D-precursor selection for bottom-up proteomics with Parallel-Accumulation SErialFragmentation (PASEF^®) on a Trapped-Ion-Mobility quadrupole-Time-Of-Flight mass spectrometer (TIMS-QTOF) 

Poster 2018: Application of PASEF^® MS/MS scans to monoclonal antibody peptide mapping

Poster 2023: Evaluating the benefit of dia-PASEF approaches and sample-specific database strategies for metaproteomics of very complex microbiomes

Poster 2022: Label-free single cell analysis workflow on the timsTOF SCP using the cellenONE platform

Poster 2022: Bringing proteomics sensitivity to single cell level with Evosep whisper on the timsTOF SCP

Poster 2022: Advantages of a Dynamic Polygon for MHC Class I and II Immunopeptides

Poster 2022: A quantitative proteomics workflow for urine and spent dialysate using data-dependent and data-independent analyses on a timsTOF Pro instrument

Poster 2022: Single-cell equivalent sensitivity on timsTOF Pro with 35 minutes gradient time enabled by label-free reference run approach

Poster 2018: Applying Trapped Ion Mobility separation (TIMS) in combination with Parallel Accumulation Serial Fragmentation (PASEF^®) for analysis of lipidomics samples

Poster 2018: Enhanced peptide mapping with a PASEF^® enabled ultra high resolution QTOF