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SCiLS™ Lab Bibliography

SCiLS™ Lab Bibliography 2024

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TitleAuthorPublicationLink
Metabolic heterogeneity affects trastuzumab response and survival in HER2-positive advanced gastric cancer Wang J.; Sun N. et al. British Journal of Cancer https://doi.org/10.2139/ssrn.4176351
Spatial N-glycomics with MALDI-MSI for human lung tissue Velickovic D.; Anderton C. https://doi.org/10.17504/protocols.io.5jyl8p876g2w/v2
Differential Distribution of Characteristic Constituents in Peel and Pulp of Aurantii Fructus Immaturus Using Maldi Mass Spectrometry Imaging Cai W.; Zhang S. et al. Available at SSRN 4698864 https://doi.org/10.2139/ssrn.4698864
Nitro Indole Derivatives as Novel Dual-Polarity Matrices for MALDI Mass Spectrometry and Imaging with Broad Applications Liang Q.; Mondal P. et al. Analytical Chemistry https://doi.org/10.1021/acs.analchem.3c04684.s001
Sodium doping and trapped ion mobility spectrometry improve lipid detection for novel MALDI-MSI analysis of oats Lau W.C.; Donnellan L. et al. Food Chemistry https://doi.org/10.2139/ssrn.4474290
An N-glycome tissue atlas of 15 human normal and cancer tissue types determined by MALDI-imaging mass spectrometry Wallace E.N.; West C.A. et al. Scientific Reports https://doi.org/10.1038/s41598-023-50957-w
Spatiotemporal Visualization of Paraquat Distribution, Toxicokinetics, and Its Detoxification in Zebrafish Using Matrix-Assisted Laser Desorption Ionization Mass Spectrometry Imaging Qin L.; Huang J. et al. Chemical Research in Toxicology https://doi.org/10.1021/acs.chemrestox.3c00338
Thin‐section‐and matrix‐free mass spectrometry imaging: Reproducible sample transfer using novel platinum‐coated porous plate formed of glass beads Ikeda T.; Kotani M. Rapid Communications in Mass Spectrometry https://doi.org/10.1002/rcm.9697
Spatial Omics Reveals that Cancer-Associated Glycan Changes Occur Early in Liver Disease Development in a Western Diet Mouse Model of MASLD Ochoa-Rios S.; Grauzam S.E. et al. Journal of Proteome Research https://doi.org/10.1021/acs.jproteome.3c00672.s001
Efficacy and pharmacodynamic effect of anti-CD73 and anti-PD-L1 monoclonal antibodies in combination with cytotoxic therapy: observations from mouse tumor models Kaistha B.P.; Kar G. et al. Cancer Biology & Therapy https://doi.org/10.1080/15384047.2023.2296048
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    • SCiLS™ Lab Bibliography 2023

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    TitleAuthorPublicationLink
    Impact of spatial metabolomics on immune-microenvironment in oral cancer prognosis: a clinical report. Bag S, Oetjen J et al. Mol Cell Biochem 2023 https://doi.org/10.1007/s11010-023-04713-3
    Spatial resolution of renal amyloid deposits through MALDI-MSI: a combined digital and molecular approach to monoclonal gammopathies. Bindi G, Smith A et al. J Clin Pathol 2023 https://doi.org/10.1136/jcp-2023-208790
    Rewiring of the N-Glycome with prostate cancer progression and therapy resistance. Butler W, McDowell C et al. NPJ Precis Oncol 2023;7(1):22 https://doi.org/10.1038/s41698-023-00363-2
    3D bioprinted colorectal cancer models based on hyaluronic acid and signalling glycans. Cadamuro F, Marongiu L et al. Carbohydr Polym 2023;302:120395 https://doi.org/10.1016/j.carbpol.2022.120395
    A Comparison of Different Sample Processing Protocols for MALDI Imaging Mass Spectrometry Analysis of Formalin-Fixed Multiple Myeloma Cells. Casadonte R, Kriegsmann J et al. Cancers (Basel) 2023;15(3) https://doi.org/10.3390/cancers15030974
    Imaging Mass Spectrometry for the Classification of Melanoma Based on BRAF/NRAS Mutational Status. Casadonte R, Kriegsmann M et al. Int J Mol Sci 2023;24(6) https://doi.org/10.3390/ijms24065110
    MALDI-IHC-Guided In-Depth Spatial Proteomics: Targeted and Untargeted MSI Combined. Claes BSR, Krestensen KK et al. Anal Chem 2023;95(4):2329-2338 https://doi.org/10.1021/acs.analchem.2c04220
    In Situ Imaging of O-Linked β-N-Acetylglucosamine Using On-Tissue Hydrolysis and MALDI Mass Spectrometry. Escobar EE, Seeley EH et al. Cancers (Basel) 2023;15(4) https://doi.org/10.3390/cancers15041224
    Longitudinal spatial mapping of lipid metabolites reveals pre-symptomatic changes in the hippocampi of Huntington's disease transgenic mice. Farzana F, McConville MJ et al. Neurobiol Dis 2023;176:105933 https://doi.org/10.1016/j.nbd.2022.105933
    MALDI mass spectrometry imaging shows a gradual change in the proteome landscape during mouse ovarian folliculogenesis. Fiorentino G, Smith A et al. Mol Hum Reprod 2023;29(4) https://doi.org/10.1093/molehr/gaad006
    Showing 1 to 10 of 222 entries
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    SCiLS™ Lab Bibliography 2022

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    TitleAuthorPublicationLink
    The fatal trajectory of pulmonary COVID-19 is driven by lobular ischemia and fibrotic remodelling. Ackermann M, Kamp JC et al. EBioMedicine 2022;85:104296 https://doi.org/10.1016/j.ebiom.2022.104296
    A Protocol for the Acquisition of Comprehensive Proteomics Data from Single Cases Using Formalin-Fixed Paraffin Embedded Sections. Acland M, Mittal P et al. Methods Protoc 2022;5(4) https://doi.org/10.3390/mps5040057
    Venoms for all occasions: The functional toxin profiles of different anatomical regions in sea anemones are related to their ecological function. Ashwood LM, Undheim EAB et al. Mol Ecol 2022;31(3):866-883 https://doi.org/10.1111/mec.16286
    An overview of image registration for aligning mass spectrometry imaging with clinically relevant imaging modalities. Balluff B ,Heeren RMA ,Race AM J Mass Spectrom Adv Clin Lab 2022;23:26-38 https://doi.org/10.1016/j.jmsacl.2021.12.006
    Mass spectrometry-based metabolomics in microbiome investigations. Bauermeister A, Mannochio-Russo H et al. Nat Rev Microbiol 2022;20(3):143-160 https://doi.org/10.1038/s41579-021-00621-9
    Fallopian tube secreted protein affects ovarian metabolites in high grade serous ovarian cancer. Bergsten TM, Levy SE et al. Front Cell Dev Biol 2022;10:1042734 https://doi.org/10.3389/fcell.2022.1042734
    Mass spectrometry imaging to explore molecular heterogeneity in cell culture. Bien T, Koerfer K et al. Proc Natl Acad Sci U S A 2022;119(29):e2114365119 https://doi.org/10.1073/pnas.2114365119
    Integrating age, BMI, and serum N-glycans detected by MALDI mass spectrometry to classify suspicious mammogram findings as benign lesions or breast cancer. Blaschke CRK, Hill EG et al. Sci Rep 2022;12(1):20801 https://doi.org/10.1038/s41598-022-25401-0
    Neuroinflammation in neuronopathic Gaucher disease: Role of microglia and NK cells, biomarkers, and response to substrate reduction therapy. Boddupalli CS, Nair S et al. Elife 2022;11 https://doi.org/10.7554/eLife.79830
    MALDI Mass Spectrometry Imaging for the Distinction of Adenocarcinomas of the Pancreas and Biliary Tree. Bollwein C, Gonҫalves JPL et al. Molecules 2022;27(11) https://doi.org/10.3390/molecules27113464
    Showing 1 to 10 of 262 entries
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    • SCiLS™ Lab Bibliography 2021

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    TitleAuthorPublicationLink
    Peak learning of mass spectrometry imaging data using artificial neural networks. Abdelmoula WM, Lopez BG et al. Nat Commun 2021;12(1):5544 https://doi.org/10.1038/s41467-021-25744-8
    GD3 synthase deletion alters retinal structure and impairs visual function in mice. Abreu CA, Teixeira-Pinheiro LC et al. J Neurochem 2021;158:694-709 https://doi.org/10.1111/jnc.15443
    Spatial differentiation of metabolism in prostate cancer tissue by MALDI-TOF MSI. Andersen MK, Høiem TS et al. Cancer Metab 2021;9(1):9 https://doi.org/10.1186/s40170-021-00242-z
    Electroblotting through Enzymatic Membranes to Enhance Molecular Tissue Imaging. Andrews WT, Bickner AN et al. J Am Soc Mass Spectrom 2021;32:1689-1699 https://doi.org/10.1021/jasms.1c00046
    Visualizing Cholesterol in the Brain by On-Tissue Derivatization and Quantitative Mass Spectrometry Imaging. Angelini R, Yutuc E et al. Anal Chem 2021;93(11):4932-4943 https://doi.org/10.1021/acs.analchem.0c05399
    Machine learning for grading and prognosis of esophageal dysplasia using mass spectrometry and histological imaging. Beuque M, Martin-Lorenzo M et al. Comput Biol Med 2021;138:104918 https://doi.org/10.1016/j.compbiomed.2021.104918
    Molecular insights into symbiosis-mapping sterols in a marine flatworm-algae-system using high spatial resolution MALDI-2-MS imaging with ion mobility separation. Bien T, Hambleton EA et al. Anal Bioanal Chem 2021;413:2767-2777 https://doi.org/10.1007/s00216-020-03070-0
    Direct N-Glycosylation Profiling of Urine and Prostatic Fluid Glycoproteins and Extracellular Vesicles. Blaschke CRK, Hartig JP et al. Front Chem 2021;9:734280 https://doi.org/10.3389/fchem.2021.734280
    Cross-Normalization of MALDI Mass Spectrometry Imaging Data Improves Site-to-Site Reproducibility. Boskamp T, Casadonte R et al. Anal Chem 2021;93(30):10584-10592 https://doi.org/10.1021/acs.analchem.1c01792
    N-Glycomic Signature of Stage II Colorectal Cancer and Its Association With the Tumor Microenvironment. Boyaval F, van Zeijl R et al. Mol Cell Proteomics 2021;20:100057 https://doi.org/10.1074/mcp.RA120.002215
    Showing 1 to 10 of 96 entries
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    • SCiLS™ Lab Bibliography 2020

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    TitleAuthorPublicationLink
    Simultaneous Detection of Zinc and Its Pathway Metabolites Using MALDI MS Imaging of Prostate Tissue. Andersen MK, Krossa S et al. Anal Chem 2020;92:3171-3179 https://doi.org/10.1021/acs.analchem.9b04903
    In situ metabolite and lipid analysis of GluN2D-/- and wild-type mice after ischemic stroke using MALDI MSI. Andrews WT, Donahue D et al. Anal Bioanal Chem 2020;412(24):6275-6285 https://doi.org/10.1007/s00216-020-02477-z
    Extracellular matrix alterations in low-grade lung adenocarcinoma compared with normal lung tissue by imaging mass spectrometry. Angel PM, Bruner E et al. J Mass Spectrom 2020;55:e4450 https://doi.org/10.1002/jms.4450
    Zonal regulation of collagen-type proteins and posttranslational modifications in prostatic benign and cancer tissues by imaging mass spectrometry. Angel PM, Spruill L et al. Prostate 2020;80(13):1071-1086 https://doi.org/10.1002/pros.24031
    Imaging Study by Mass Spectrometry of the Spatial Variation of Cellulose and Hemicellulose Structures in Corn Stalks. Arnaud B, Durand S et al. J Agric Food Chem 2020;68(13):4042-4050 https://doi.org/10.1021/acs.jafc.9b07579
    MALDI-TOF Mass Spectrometry Revealed Significant Lipid Variations in Follicular Fluid and Somatic Follicular Cells but Not in Enclosed Oocytes between the Large Dominant and Small Subordinate Follicles in Bovine Ovary. Bertevello PS, Teixeira-Gomes AP et al. Int J Mol Sci 2020;21(18) https://doi.org/10.3390/ijms21186661
    µ Opioid Receptor Agonism for L-DOPA-Induced Dyskinesia in Parkinson's Disease. Bezard E, Li Q et al. J Neurosci 2020;40(35):6812-6819 https://doi.org/10.1523/JNEUROSCI.0610-20.2020
    Visualizing Microbial Community Dynamics via a Controllable Soil Environment. Bhattacharjee A, Velickovic D et al. mSystems 2020;5(1) https://doi.org/10.1128/mSystems.00645-19
    Detection of small molecule concentration gradients in ocular tissues and humours. Boughton BA, Thomas ORB et al. J Mass Spectrom 2020;55:e4460 https://doi.org/10.1002/jms.4460
    N-glycomic signature of stage II colorectal cancer and its association with the tumor microenvironment. Boyaval F, Van Zeijl R et al. Mol Cell Proteomics 2020 https://doi.org/10.1074/mcp.RA120.002215
    Showing 1 to 10 of 56 entries
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    • SCiLS™ Lab Bibliography 2019

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    TitleAuthorPublicationLink
    Extracellular Matrix Alterations in Low Grade Lung Adenocarcinoma Compared to Normal Lung Tissue by Imaging Mass Spectrometry Angel PM, Bruner E et al. Journal of Mass Spectrometry. 2019 https://doi.org/10.1002/jms.4450
    Extracellular Matrix Imaging of Breast Tissue Pathologies by MALDI–Imaging Mass Spectrometry Angel PM, Schwamborn K et al. PROTEOMICS–Clinical Applications. 2019;13(1):1700152 https://doi.org/10.1002/prca.201700152
    Neratinib protects pancreatic beta cells in diabetes Ardestani A, Li S et al. Nature communications. 2019;10(1):1-17 https://doi.org/10.1038/s41467-019-12880-5
    Integrative Clustering in Mass Spectrometry Imaging for Enhanced Patient Stratification Balluff B, Buck A et al. PROTEOMICS–Clinical Applications. 2019;13(1):1800137 https://doi.org/10.1002/prca.201800137
    Dual strategy for reduced signal-suppression effects in matrix-assisted laser desorption/ionization mass spectrometry imaging Bastrup J, Birkelund S et al. Rapid Communications in Mass Spectrometry. 2019;33(22):1711-21 https://doi.org/10.1002/rcm.8521
    Metal Oxide Laser Ionization Mass Spectrometry Imaging (MOLI MSI) Using Cerium (IV) Oxide Basu SS, McMinn MH et al. Analytical chemistry. 2019;91(10):6800-7 https://doi.org/10.1021/acs.analchem.9b00894
    Rapid MALDI mass spectrometry imaging for surgical pathology Basu SS, Regan MS et al. NPJ precision oncology. 2019;3(1):1-5 https://doi.org/10.1038/s41698-019-0089-y
    MALDI Mass Spectrometry Imaging Linked with Top-Down Proteomics as a Tool to Study the Non-Small-Cell Lung Cancer Tumor Microenvironment Berghmans E, Van Raemdonck G et al. Methods and protocols. 2019;2(2):44 https://doi.org/10.3390/mps2020044
    Antibody Panel Based N-Glycan Imaging for N-Glycoprotein Biomarker Discovery Black AP, Angel PM et al. Current protocols in protein science. 2019;98(1):e99 https://doi.org/10.1002/cpps.99
    A novel mass spectrometry platform for multiplexed N-Glycoprotein biomarker discovery from patient biofluids by antibody panel based N-Glycan imaging Black AP, Liang H et al. Analytical chemistry. 2019;91(13):8429-35 https://doi.org/10.1021/acs.analchem.9b01445
    Showing 1 to 10 of 86 entries
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    For Research Use Only. Not for use in clinical diagnostic procedures.